Yongjun Wang, Xiuting Hua, Jingsheng Xu, Zhichang Chen,....Jisen Zhang*(2019).Comparative Genomics revealed the Gene Evolution and Functional Divergence of Magnesium Transporter Families in Saccharum. BMC Genomics. DOI: 10.1186/s12864-019-5437-3.

Weichang Hu#; Xiuting Hua#; Qing Zhang; Jianping Wang; ...Jisen Zhang*(2018).New Insights into the Evolution and Functional Divergence of the SWEET family in Saccharum Based on Comparative Genomics. BMC Plant Biology. DOI: 10.1186/s12870-018-1495-y

Jisen Zhang†*, Xingtan Zhang†, Haibao Tang†, Qing Zhang†, Xiuting Hua...et al., Chifumi Nagai*, Ray Ming*(2018).Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L..Nature Genetics, doi.org/10.1038/s41588-018-0237-2

Huimin Xu, Qingyi Yu, Yan Shi, Xiuting Hua, Haibao Tang, Long Yang*, Ray Ming*, and Jisen Zhang*. (2018) PGD: Pineapple Genomics Database. Horticulture Research. 5:66 :DOI: 10.1038/s41438-018-0078-2

Zhang Jisen, Zhang Qing, Li Leiting, Tang Haibao, Zhang Qiong, Chen Yang, Arro Jie, Zhang Xingtan, Wang Aiqin, Miao Chenyong, Ming Ray*. (2018) Recent Polyploidization Events in Three Saccharum Founding Species. Plant Biotechnology Journal.

Xiping Yang, Jian Song, James Todd, Ze Peng, ..., Jisen Zhang,*.(2018) Target enrichment sequencing of 307 germplasm accessions identified ancestry of ancient and modern hybrids and signatures ...genomes. Plant Biotechnology Journal.

Guangrui Dong, Jiao Shen, Qing Zhang, ...and Jisen Zhang*.(2018) Development and applications of chromosome-specific cytogenetic BAC-FISH probes in S. spontaneum. Frontiers in Plant Science. doi: 10.3389/fpls.2018.00218 ​

Fan Zhu, Ching Man Wai, Jisen Zhang,...*. (2018) Differential expression of hormone related genes between extreme segregants of a Saccharum interspecific F2 population. 2018.Euphytica 214(3).DOI:10.1007/s10681-018-2137-z. ​

Huiling Liu, Xiping Yang, Qian You,Jisen Zhang,...*. (2018) Pedigree, marker recruitment, and genetic diversity of modern sugarcane cultivars in China and the United States. Euphytica. 214:48 https://doi.org/10.1007/s10681-018-2127-1.

Ching Man Wai, Jisen Zhang, ...*. (2017) Cell wall metabolism and hexose allocation contribute to biomass accumulation in high yielding extreme segregants of a Saccharum interspecific F2 population. BMC Genomics. 18:773. doi.org/10.1186/s12864-017-4158-8.

Xiping Yang, Jian Song, Qian You, Dev R. Paudel, Jisen Zhang and Jianping Wang*. (2017)Mining sequence variations in representative polyploid sugarcane germplasm accessions. BMC Genomics. 18:594.DOI: 10.1186/s12864-017-3980-3.

Aijuan Xue, Zhen Li, Muchen Cai, Qing Zhang, Xingtan Zhang, Ray Ming, Jisen Zhang*(2017).Identification and Characterization of microRNAs from Saccharum officinarum by deep sequencing. Tropical Plant Biology. DOI: 10.1007/s12042-017-9190-y.

Ching Man Wai, Robert VanBuren, Jisen Zhang, ...*. (2017)Temporal and spatial transcriptomic and microRNA dynamics of CAM photosynthesis in pineapple. The Plant Journal. DOI: 10.1111/tpj.13630.

Qing Zhang, Muchen Cai, Xiaomin Yu, Lishan Wang,... and Jisen Zhang* (2017). Transcriptome dynamics of Camellia sinensis in response to continuous salinity and drought stress. Tree Genetics & Genomes. 13:78. DOI: 10.1007/s11295-017-1161-9.

Liming Wang, Yuexia Zheng, Shihui Ding; Qing Zhang, Youqiang Chen, Jisen Zhang* (2017). Molecular cloning, structure, phylogeny and expression analysis of the invertase gene family in sugarcane. BMC Plant Biology. DOI:10.1186/s12870-017-1052-0.

Yihong Chen, Qing Zhang, Weichang Hu,Xingtan Zhang, Liming Wang, Xiuting Hua, Qingyi Yu, Ray Ming, Jisen Zhang.* (2017). Evolution and expression of the fructokinase gene family in Saccharum. BMC Genomics. DOI: 10.1186/s12864-017-3535-7

VanBuren R., C. M. Wai, J. Zhang, J. Han, J. Arro, Z. Lin, Z. Liao, ... * (2016). Extremely low nucleotide diversity in the X-linked region of papaya caused by a strong selective sweep. Genome Biology. doi: 10.1186/s13059-016-1095-9.

Jisen Zhang, Anupma Sharma, Qingyi Yu, Jianping Wang, Leiting Li, Lin Zhu...*(2016). Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum. BMC Genomics. doi: 10.1186/s12864-016-2817-9.

​Jian Song, Xiping Yang, Marcio F. R. Resende Jr., Leandro Gomide Neves, James Todd, Jisen Zhang, ...* (2016). Natural allelic variations in highly polyploid Saccharum complex. Frontiers in Plant Science. doi: 10.3389/fpls.2016.00804.

Qing Zhang，Weichang Hu, Fan Zhu, Liming Wang, Qingyi Yu, Ray Ming, Jisen Zhang*(2016).Structure, Phylogeny, Allelic Haplotypes and Expression of Sucrose Transporter Gene Families in Saccharum. BMC Genomics. 17:88. DOI: 10.1186/s12864-016-2419-6

Ming Ray*...Jisen Zhang...et al. (2015) .The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics . doi:10.1038/ng.3435)

Robert VanBuren*, Fanchang Zeng*, Cuixia Chen*, Jisen Zhang*...et al.(2015). Origin and domestication of papaya Yh chromosome. Genome Research, 25:524–533. doi: 10.1101/gr.183905.114.

Jisen Zhang, Juan Liu, Ray Ming*. (2014). Genomic analysis of CAM plant pineapple. Journal of Experimental Botany. 65 (13):3395-3404. doi:10.1093/jxb/eru101

Jisen Zhang, Boualem A., Bendahmane A., Ray. Ming*. (2014). Genomics of sex determination. Current Opinion in Plant Biology. 2014, 18:110–116.

Jisen Zhang, Jie Arro, Youqiang Chen, Ray Ming*(2013). Haplotype analysis of sucrose synthase gene family in three Saccharum species. BMC Genomics. 14:314.

Jisen Zhang, Chifumi Nagai, Qingyi Yu, Yongbao. Pan, Tomas Ayala-Silva, Raymond Schnell, Jack Comstock, Aru Arumuganathan , Ray Ming* (2012). Genome size variation in three Saccharum species. Euphytica. 185:511–519.

Jingdong Sun#, Jisen Zhang#, Clayton Larue, Steven Huber* (2011). Decrease in leaf sucrose synthesis leads to increased leaf starch turnover and decreased RuBP regeneration-limited photosynthesis ...of SPSA1. Plant, Cell & Environment. 34, 592–604.